Center for Functional MRI In the Department of Radiology

Bioengineering 280A: Principles of Biomedical Imaging
Fall Quarter 2012

Instructors: Thomas Liu
Center for FMRI (Map)
(858) 822-0542; ttliu@ucsd.edu

Tzzy-Ping Jung
Swartz Center for Computational Neuroscience
(858) 822-7555; tpjung@ucsd.edu

Scott Makeig
Swartz Center for Computational Neuroscience
858) 822-7539; smakeig@ucsd.edu
Lectures: Mondays and Wednesdays, 11:00 AM to 12:20 PM
Powell-Focht Bioengineering Hall (PFBH) Room 161
Office Hours: Mondays and Wednesdays 12:20 to 1:20 pm, PFBH 161
Teaching Assistant: Amran Asadi; aasadi@ucsd.edu
TA Office hours: Mondays 9:30 am to 11 am; PFBH 161
Texts: 1) Required Text: Principles of MRI by D.G. Nishimura (available from www.lulu.com)
2) Assorted Handouts
Prerequisites: Graduate standing or consent of intructor.
Course Mirror Sites: fmriserver.ucsd.edu
cfmriweb.ucsd.edu

Handouts:

  1. Information Sheet
  2. Tentative Syllabus
  3. Homework 1 with MATLAB file and Supplementary Notes
  4. Homework 2 with Safety Video (200MB). Also available online here
  5. Homework 3
  6. Example for Quiz 1
  7. Homework 4 with MATLAB file
  8. Homework 5 with with MATLAB file
  9. Homework 6 with with Article 1; Article 2; Article 3.
  10. Homework 7 with getting started PDF
  11. Homework 8 with ICA PDF
  12. Final Project

Lecture Slides:

  1. Slides from 2010
  2. Introductory Lecture (10/1/12)
  3. Signals and Fourier Transforms Lecture (10/3/12)
  4. MRI Lecture 1 (10/8/12)
  5. MRI Lecture 2 (10/10/12)
  6. MRI Lecture 3 (10/15/12)
  7. MRI Lecture 4 (10/17/12)
  8. MRI Lecture 5 (10/24/12)
  9. MRI Lecture 6 (10/29/12)
  10. MRI Lecture 7 (10/31/12)
  11. EEG Lecture 1 (11/05/12)
  12. EEG Lecture 2 (11/07/12)
  13. EEG Lecture 3 (11/14/12)
  14. EEG Lecture 4 (11/19/12)
  15. EEG Lecture 5 (11/21/12)
  16. fMRI/MEG/EEG Lecture (11/26/12)
  17. BCI Lecture 1 (12/03/12)
  18. BCI Lecture 2 (12/05/12)

Related Links:

  1. Convolution Website
  2. Magritek MRI Videos
  3. Duke Virtual Imaging Lab
  4. On-line Medical Imaging Resources by P. Sprawls
  5. Principles of Computerized Tomographic Imaging by Kak and Slaney
  6. The Basics of MRI by Joseph Hornak (an animated on-line book).
  7. The Basics of NMR by Joseph Hornak (an animated on-line book).
  8. MRI Educational Links
  9. MRI Tutorials and Q&A
  10. MRI Artifacts
  11. SpinBench: Graphic MR Pulse Sequence Environment for MAC OS X
  12. Bloch Simulator for Windows/MAC/Linux
  13. MRI Software Tools

Related Classes on the Web:

  1. Bioengineering 278 Magnetic Resonance Imaging Lab
  2. SOM276A-C fMRI Courses in the UCSD School of Medicine
  3. COGSCI 276 NeuroImaging (formely taught by M. Sereno at UCSD)
  4. BME530 Medical Imaging Systems (taught by W. Block at Univ. Wisconsin Madison)
  5. BME516 Medical Imaging Systems (taught by D. Noll at Univ. Michigan )
  6. EE369C Medical Image Reconstruction (taught by J. Pauly at Stanford)
  7. EE591 MRI (taught by K. Nayak at USC)
  8. BE248 MRI (taught by M. Tyszka at Caltech)
  9. HST.584J/22.561J Magnetic Resonance Analytic, Biochemical, and Imaging Techniques (MIT,Spring 2006)
  10. 22.56J/HST.561J Noninvasive Imaging in Biology and Medicine (MIT, Fall 2005)
  11. 22.058 Principles of Medical Imaging (MIT, Fall 2002)