Reordering Dicom files generated using the GE 3T Scanners
DICOM files generated by the upgraded 3T scanners (HDx, 14x) are not saved in sequential order. For the AFNI to3d program to create a AFNI BRIK with the correct slice order, these dicom files need to be reordered. We have developed a Perl script 'imseq' for this purpose.
The script is now available on all our servers as well as for download.
Usage: imseq [directories to convert]
Example: imseq directory1 directory2 directory3
NOTE: This should only be used after data is transfered to the server using gecopy and not on the 3T consoles.